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- Nucleotide BLAST: Search nucleotide databases using a nucleotide query
PSI-BLAST allows the user to build a PSSM (position-specific scoring matrix) using the results of the first BlastP run PHI-BLAST performs the search but limits alignments to those that match a pattern in the query DELTA-BLAST constructs a PSSM using the results of a Conserved Domain Database search and searches a sequence database
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